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BioEdit

Free

An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer. Several sequence manipulation and analysis options and links to external analysis programs facilitate a working environment which allows you to view and manipulate sequences with simple point-and-click operations.

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BioEditor

Free

Designed to be used by structural scientists reporting & evaluating their data.

is a standalone Windows program that ...with Windows NT, Windows ME and Windows 

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